Pescado has mentioned that any lot -- house, dorm, or apartment -- that is not built in Uni will have a broken Uni controller when placed in a Uni hood. Build your apartment in Uni.
Hmmm, a little off-topic, but is the reverse of this true? If I build dorms and/or residences in the Uni subhood, and then move them to my base hood uni, will the controller still work? Anybody know? I'd love to skip spawning all those stupid semester testers.
I might have to do some experimenting...