OK. I'll edit this one with the results. As for the strangely numbered file, I use Delphy's tool for Sims3pack placement since I have had problems, along with many others, since the first patch using just the Sims 3 installer and it is hard to install with that things that aren't downloaded from their site. If there is a way I don't know it.
The test begins: First the removal of custom content... OK, that worked. It was back to a decent speed if not a bit faster. Now to figure out where the slow-down came from. I'll be back to edit.
EDITED: Replaced all the "package" contents and removed only the strangely named ones; example is 0x3f78e98b4b06467f925e22041e8b58e9. Ran like a dream. The only problem with this is there are 390 of them and I have no idea what the heck they are and what I'll be loosing by not using them. There are also 260+ in my Sims 3 downloads file in My Docs.