I'm having similar issues -- I communicated with the spirit in the hidden garden once and got his remains, which were to be put in the tomb next to his wife's remains. I was able to get to the tomb, but couldn't get rid of the remains. The game went all BlueLot on me after the save, and when I reopened an earlier save with no cc and tried to redo the mission, the spirit wouldn't communicate with my sim.
The remains are no longer in my sim's backpack, the people who own the Hidden Garden house keep calling and requesting my sim to come and talk to the spirit, but when my sim gets to the house, the dialogue box is blank when the house owner greets my sim. When my sim mourns (which should call the spirit), nothing happens.
I had a mess of cc on my lots, and kept having to revert to older saves without cc. I recently (today) got this Blue Lot fixer (
http://www.modthesims.info/showthread.php?t=381540) at MTS and am going to run my cc through it. If I find it makes a difference in completing missions, I'll report back.