Try this mod:
http://ts3.tscexchange.com/index.php?topic=3907.0 I've been using that mod since before the running disease started, but in my experience when my sims start running everywhere, soon or soon-ish later they will stop.
Honestly I'm not sure if their stopping is from the mod or not, since as I said I haven't fully experienced the issue, but I think it's worth a shot.